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vtkMINCImageReader.h
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1/*=========================================================================
2
3 Program: Visualization Toolkit
4 Module: vtkMINCImageReader.h
5
6 Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
7 All rights reserved.
8 See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
9
10 This software is distributed WITHOUT ANY WARRANTY; without even
11 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
12 PURPOSE. See the above copyright notice for more information.
13
14=========================================================================*/
15/*=========================================================================
16
17Copyright (c) 2006 Atamai, Inc.
18
19Use, modification and redistribution of the software, in source or
20binary forms, are permitted provided that the following terms and
21conditions are met:
22
231) Redistribution of the source code, in verbatim or modified
24 form, must retain the above copyright notice, this license,
25 the following disclaimer, and any notices that refer to this
26 license and/or the following disclaimer.
27
282) Redistribution in binary form must include the above copyright
29 notice, a copy of this license and the following disclaimer
30 in the documentation or with other materials provided with the
31 distribution.
32
333) Modified copies of the source code must be clearly marked as such,
34 and must not be misrepresented as verbatim copies of the source code.
35
36THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE SOFTWARE "AS IS"
37WITHOUT EXPRESSED OR IMPLIED WARRANTY INCLUDING, BUT NOT LIMITED TO,
38THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
39PURPOSE. IN NO EVENT SHALL ANY COPYRIGHT HOLDER OR OTHER PARTY WHO MAY
40MODIFY AND/OR REDISTRIBUTE THE SOFTWARE UNDER THE TERMS OF THIS LICENSE
41BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL OR CONSEQUENTIAL DAMAGES
42(INCLUDING, BUT NOT LIMITED TO, LOSS OF DATA OR DATA BECOMING INACCURATE
43OR LOSS OF PROFIT OR BUSINESS INTERRUPTION) ARISING IN ANY WAY OUT OF
44THE USE OR INABILITY TO USE THE SOFTWARE, EVEN IF ADVISED OF THE
45POSSIBILITY OF SUCH DAMAGES.
46
47=========================================================================*/
74#ifndef vtkMINCImageReader_h
75#define vtkMINCImageReader_h
76
77#include "vtkIOMINCModule.h" // For export macro
78#include "vtkImageReader2.h"
79
80class vtkStringArray;
81class vtkIdTypeArray;
82class vtkDoubleArray;
83class vtkMatrix4x4;
84
85// A special class that holds the attributes
87
88class VTKIOMINC_EXPORT vtkMINCImageReader : public vtkImageReader2
89{
90public:
92
94 void PrintSelf(ostream& os, vtkIndent indent) VTK_OVERRIDE;
95
99 virtual void SetFileName(const char *name);
100
104 virtual const char* GetFileExtensions() {
105 return ".mnc"; }
106
110 virtual const char* GetDescriptiveName() {
111 return "MINC"; }
112
116 virtual int CanReadFile(const char* name);
117
124
126
131 virtual double GetRescaleSlope();
132 virtual double GetRescaleIntercept();
134
136
141 vtkSetMacro(RescaleRealValues, int);
142 vtkBooleanMacro(RescaleRealValues, int);
143 vtkGetMacro(RescaleRealValues, int);
145
147
153 virtual double *GetDataRange();
154 virtual void GetDataRange(double range[2]) {
155 double *r = this->GetDataRange();
156 range[0] = r[0]; range[1] = r[1]; };
158
162 virtual int GetNumberOfTimeSteps();
163
165
168 vtkSetMacro(TimeStep, int);
169 vtkGetMacro(TimeStep, int);
171
177
178protected:
181
184
185 double ValidRange[2];
186 double ImageRange[2];
187 double DataRange[2];
188
196
198
199 virtual int OpenNetCDFFile(const char *filename, int& ncid);
200 virtual int CloseNetCDFFile(int ncid);
201 virtual int IndexFromDimensionName(const char *dimName);
204 static int ConvertMINCTypeToVTKType(int minctype, int mincsigned);
205
206 virtual void ExecuteInformation();
208
209private:
210 vtkMINCImageReader(const vtkMINCImageReader&) VTK_DELETE_FUNCTION;
211 void operator=(const vtkMINCImageReader&) VTK_DELETE_FUNCTION;
212
213};
214
215#endif
general representation of visualization data
Definition: vtkDataObject.h:65
dynamic, self-adjusting array of double
dynamic, self-adjusting array of vtkIdType
Superclass of binary file readers.
a simple class to control print indentation
Definition: vtkIndent.h:40
Store vtkAlgorithm input/output information.
A container for a MINC image header.
A reader for MINC files.
virtual double GetRescaleIntercept()
virtual double * GetDataRange()
Get the scalar range of the output from the information in the file header.
virtual const char * GetFileExtensions()
Get the entension for this file format.
virtual int CloseNetCDFFile(int ncid)
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
virtual vtkMINCImageAttributes * GetImageAttributes()
Get the image attributes, which contain patient information and other useful metadata.
virtual int IndexFromDimensionName(const char *dimName)
virtual double GetRescaleSlope()
Get the slope and intercept for rescaling the scalar values to real data values.
virtual int CanReadFile(const char *name)
Test whether the specified file can be read.
virtual vtkMatrix4x4 * GetDirectionCosines()
Get a matrix that describes the orientation of the data.
static int ConvertMINCTypeToVTKType(int minctype, int mincsigned)
virtual void SetFileName(const char *name)
Set the file name.
static vtkMINCImageReader * New()
virtual void ExecuteInformation()
virtual int OpenNetCDFFile(const char *filename, int &ncid)
vtkMINCImageAttributes * ImageAttributes
virtual void ExecuteDataWithInformation(vtkDataObject *out, vtkInformation *outInfo)
This is a convenience method that is implemented in many subclasses instead of RequestData.
virtual int ReadMINCFileAttributes()
virtual int GetNumberOfTimeSteps()
Get the number of time steps in the file.
virtual void FindRangeAndRescaleValues()
virtual void GetDataRange(double range[2])
vtkMatrix4x4 * DirectionCosines
virtual const char * GetDescriptiveName()
Get the name of this file format.
represent and manipulate 4x4 transformation matrices
Definition: vtkMatrix4x4.h:42
a vtkAbstractArray subclass for strings
@ range
Definition: vtkX3D.h:238
@ name
Definition: vtkX3D.h:219
vtkSetMacro(IgnoreDriverBugs, bool)
Updates the extensions string.
vtkBooleanMacro(IgnoreDriverBugs, bool)
Updates the extensions string.